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Summary of parameters used in simulations of noncoding sequence evolution. |
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| Parameter |
Value |
Source |
Refs. |
|
|
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| Sequence length |
10 Kb |
D. mel |
this work (Fig. 1) |
| AT : GC |
60 : 40 |
Drosophila spp. |
this work, [31,55] |
| Transition / Transversion Bias |
2 |
Drosophila spp. |
[25,56] |
| Substitution model |
HKY85 |
- |
[54] |
| Point substitutions : Indels |
10 : 1 |
Drosophila spp. |
[22,23,25] |
| Indel spectrum |
- |
D. mel |
[57] |
| Median constrained block length |
18 bp |
D. mel vs. D. vir |
[25] |
| Mean density of constrained blocks |
0.2 |
D. mel vs. D. vir |
[25] |
Pollard et al. BMC Bioinformatics 2004 5:6 doi:10.1186/1471-2105-5-6 |
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