Table 3

Intra- and inter-species gene prediction accuracy Intra-species performance figures derived from 5-fold cross-validation are along the major diagonal in bold. At Arabidopsis thaliana, Ce Caenorhabditis elegans, Dm Drosophila melanogaster, Os Oryza sativa. SN and SP correspond to sensitivity and specificity.

Genomic DNA

At

Ce

Dm

Os

Parameters

Measure

SN

SP

SN

SP

SN

SP

SN

SP


At

Nuc

97.1

95.2

78.7

91.3

77.7

68.0

90.7

71.8

Exon

82.9

81.2

44.3

52.8

38.6

24.0

57.1

42.3

Gene

54.3

46.8

20.9

11.3

18.8

5.7

20.5

9.7

Ce

Nuc

83.5

91.5

97.6

94.2

81.3

73.6

79.7

74.5

Exon

40.5

49.9

85.5

79.3

42.2

29.8

27.5

26.0

Gene

25.7

18.1

46.0

32.5

21.9

8.8

13.9

7.3

Dm

Nuc

30.0

95.3

45.9

95.0

94.3

86.5

78.4

89.8

Exon

16.5

41.3

29.9

47.2

78.6

67.2

50.0

58.4

Gene

3.2

4.3

7.8

6.9

50.8

37.5

36.3

28.9

Os

Nuc

39.3

96.3

24.9

95.5

79.8

88.7

86.2

94.0

Exon

30.7

47.6

11.1

36.6

47.4

44.4

70.2

72.4

Gene

5.1

6.1

5.3

7.8

27.2

17.2

51.2

37.0


Korf BMC Bioinformatics 2004 5:59   doi:10.1186/1471-2105-5-59

Open Data