Research article
Use of a structural alphabet for analysis of short loops connecting repetitive structures
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* Corresponding author: Alexandre G de Brevern alexandre.debrevern@ebgm.jussieu.fr
- † Equal contributors
Equipe de Bioinformatique Génomique et Moléculaire (EBGM), INSERM E0346, Université Denis DIDEROT-Paris 7, case 7113, 2, place Jussieu, 75251 Paris Cedex 05, France
BMC Bioinformatics 2004, 5:58 doi:10.1186/1471-2105-5-58
Published: 12 May 2004Additional files
Additional File 1:
Supplementary data 1: Comparison between the secondary structure assignments (file_1.rtf). file_1.rtf is a Rich Text Format file. It contains the example of the 6 assignment methods for the proto-oncogene Mtcp-1 (PDB code 1A1X chain A), see Figure 2 for details.
Format: RTF Size: 11KB Download file
Additional File 2:
Supplementary data 2: Representation of the secondary structure assignments (file_2.doc). Example of the proto-oncogene Mtcp-1 (PDB code 1A1X chain A), see Figure 3 for details.
Format: DOC Size: 105KB Download file
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Additional File 3:
Supplementary data 3: Description of Protein Blocks in the databank and in the loops (file_3.xls). file_3.xls is an Excel file. For each protein block (PB; labeled from a to p), we report the occurrence frequency (frq) in the overall database and in the loops set, the four main PB transitions and the distribution in the secondary structures (α-helix, coil and β-strand) of the central residue assigned by PSEA.
Format: XLS Size: 27KB Download file
This file can be viewed with: Microsoft Excel Viewer