|
Comparison of seven ras family clusters provided by right singular vectors with KOG and Homologen clusters. Only proteins having one of the five strongest projections ("top five") for a given singular vector are used in the comparison. Few genomes have KOG members specifically identified by NCBI, however, most or all of the "top 5" proteins for a given rsv would likely be identified as members of the same KOG family. For 197a (Rab11), the KOG # provided in parentheses is that of the closely related human protein. |
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| rsv# |
gi# |
projection |
organism |
GeneName |
kog# |
hg# |
|
|
||||||
| 197a |
6679583 |
0.06900 |
Mmus |
Rab11b |
(0087) |
3109 |
| (Rab11) |
14249144 |
0.06892 |
Rnov |
Rab11b |
na |
3109 |
| 31209781 |
0.06827 |
Agam |
na |
na |
3109 |
|
| 31209783 |
0.06827 |
Agam |
na |
na |
3109 |
|
| 31209785 |
0.06826 |
Agam |
na |
na |
3109 |
|
| 236a |
31542143 |
0.05883 |
Mmus |
Arha |
na |
1257 |
| (ApRas) |
16923986 |
0.05883 |
Rnov |
Arha2 |
na |
1257 |
| 10835049 |
0.05873 |
Hsap |
RHOA |
0393 |
1257 |
|
| 28395033 |
0.05610 |
Hsap |
ARHC |
0393 |
22408 |
|
| en131312 |
0.05412 |
Frub |
na |
na |
na |
|
| 277 |
27689505 |
0.07229 |
Rnov |
Rab5c |
na |
20961 |
| (Rab5) |
4759020 |
0.07214 |
Hsap |
RAB5C |
0092 |
20961 |
| 31225537 |
0.07022 |
Agam |
na |
na |
20961 |
|
| 31225545 |
0.07022 |
Agam |
na |
na |
20961 |
|
| 31225553 |
0.07022 |
Agam |
na |
na |
20961 |
|
| 277a |
15718763 |
0.04278 |
Hsap |
KRAS2 |
0395 |
2159 |
| (HaRas) |
4885425 |
0.04243 |
Hsap |
HRAS |
0395 |
3907 |
| 34861217 |
0.04243 |
Rnov |
Hras1 |
na |
3907 |
|
| 4505451 |
0.04176 |
Hsap |
NRAS |
0395 |
20564 |
|
| 34859609 |
0.04165 |
Rnov |
Nras |
na |
20564 |
|
| 350a |
9845511 |
0.07403 |
Hsap |
RAC1 |
0393 |
23126 |
| (RasC3) |
38081613 |
0.07403 |
Mmus |
Rac1 |
na |
23126 |
| 9845509 |
0.06942 |
Hsap |
RAC1b |
0393 |
23126 |
|
| 4826962 |
0.06820 |
Hsap |
RAC3 |
0393 |
3705 |
|
| 18875380 |
0.06820 |
Mmus |
Rac3 |
na |
3705 |
|
| 387a |
34861437 |
0.03486 |
Rnov |
Rab1B |
na |
23689 |
| (Rab1) |
21313162 |
0.03413 |
Mmus |
Rab1B |
na |
23689 |
| 13569962 |
0.03400 |
Hsap |
RAB1B |
0084 |
23689 |
|
| 27709432 |
0.03400 |
Rnov |
Rab1B-like |
na |
27733 |
|
| en156199 |
0.03396 |
Frub |
na |
na |
na |
|
| 389a |
4758988 |
0.04851 |
Hsap |
RAB1A |
0084 |
3067 |
| (Rab/Ras) |
6679587 |
0.04851 |
Mmus |
Rab1A |
na |
3067 |
| 13569962 |
0.04840 |
Hsap |
RAB1B |
0084 |
23689 |
|
| en160503 |
0.04824 |
Frub |
na |
na |
na |
|
| 13592035 |
0.04811 |
Rnov |
Rab1A |
na |
3067 |
|
Stuart and Berry BMC Bioinformatics 2004 5:204 doi:10.1186/1471-2105-5-204 |
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