Figure 3.

SVD-based proteome phylogeny (A) of nine eukaryotes with percentage branch support: top – bootstrap; bottom – novel jackknife. An unsupported alternative phylogeny containing the "ecdysozoan" lineage is indicated by the dashed red branches. Percentage branch support values for the various clades of the tree are also provided to the left (B) for trees built using all proteins, as well as trees built after poorly described proteins are removed using either of two alternative vector magnitude inclusion values (>0.005, >0.05).