Figure 6.

Comparison of PhyME to 1 species and 2 species MEME, and to PhyloGibbs and EMnEM, for fly enhancers. The parenthetical number next to an enhancer name is the number of strong occurrences of the known weight matrix, in the D. melanogaster sequence.

Sinha et al. BMC Bioinformatics 2004 5:170   doi:10.1186/1471-2105-5-170
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