Table 1 |
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|
A comparison of the prediction results based on using different data types. PPI stands for protein-protein Interaction. The percentile rank of the true pathway is defined as the ratio between the number of pathways having a higher score than the "true" pathway to the number of all permuted pathways. |
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|
MAPK pathway |
PPI |
Expression |
PPI + Expression |
|||
|
|
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|
The number of pathways having a higher score |
Percentile rank of the true pathway |
The number of pathways having a higher score |
Percentile rank of the true pathway |
The number of pathways having a higher score |
Percentile rank of the true pathway |
|
|
|
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|
Pheromone Response |
240 |
0.05 |
24 |
0.005 |
1 |
10-3.7 |
|
Filamentous Growth |
7 |
0.06 |
4 |
0.006 |
0 |
0 |
|
Cell Wall Integrity |
70 |
0.10 |
80 |
0.11 |
17 |
0.02 |
|
High Osmolarity |
0 |
0 |
34 |
0.28 |
0 |
0 |
|
|
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|
Liu and Zhao BMC Bioinformatics 2004 5:158 doi:10.1186/1471-2105-5-158 |
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