Table 1 |
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Identitag as a tag identifier. This table provides examples illustrating various situations regarding tag identification using Identitag. |
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Tag sequence |
Transcript identification number |
Protein identification number |
Protein description |
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1. Unidentified |
CATGACAGCACGGG |
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one EST cluster |
CATGAAAATTCTAA |
BBSRC603768552F1.1.3.1 |
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2. EST cluster(s) |
redundant EST clusters |
CATGAGAATAATCT |
BBSRC602906088F1.1.3.4 BBSRC602906088F1.1.3.5 AJ508717 |
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more than one EST clusters |
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non redundant EST clusters |
CATGAAAGACTTCT |
12595754.1.3.1 BBSRC603772421F1.1.3.1 AB038230.1.3.477 |
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3. Annotated (one annotated transcript sequence) |
CATGAAAGCCAAGA |
J02828 |
P09207 |
Tubulin beta-6 chain |
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4. Annotated (different annotated transcript sequences with the same annotation) |
CATGAACTAAAACC |
BBSRC603002454F1.1.3.1 BSRC603002454F1.1.3.10 |
P18937 P18937 |
NADH-ubiquinone oxidoreductase chain 2 NADH-ubiquinone oxidoreductase chain 2 |
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5. More than one different annotations |
redundant annotations |
CATGCACTTTGTAT |
BBSRC603008189F1.1.3.1 BBSRC603122686F1.1.3.2 AF251344 |
Q8QG60 Q9NP50 Q8QG52 |
Cryptochrome 2 Hypothetical protein Cryptochrome 2 (Fragment) |
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non redundant : multiple match |
CATGGTGGTGTGGT |
AB038230.1.3.135 gcag0018c.a.01_5.1.3.1 |
P16039 Q8R4X1 |
Nucleophosmin Alkaline ceramidase |
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Keime et al. BMC Bioinformatics 2004 5:143 doi:10.1186/1471-2105-5-143 |
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