Research article
Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA
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* Corresponding author: Michael P Cummings mike@umiacs.umd.edu
Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742-3360, USA
BMC Bioinformatics 2004, 5:132 doi:10.1186/1471-2105-5-132
Published: 16 September 2004Additional files
Additional File 1:
Arabidopsis thaliana data file File is plain text, space delimited. First row is column headings with variable names: edit; + site is edited, - site is not edited; -20 through 20, nucleotide position relative to edited site; cp, codon position; fe, estimated folding energy; dfe, difference in estimated folding energy between pre-edited and edited sequences; and loc, location of focus site (position 0) in GenBank file. Each subsequent line represents a observation.
Format: TXT Size: 91KB Download file
Additional File 2:
Brassica napus data file File is plain text, space delimited. First row is column headings with variable names: edit; + site is edited, - site is not edited; -20 through 20, nucleotide position relative to edited site; cp, codon position; fe, estimated folding energy; dfe, difference in estimated folding energy between pre-edited and edited sequences; and loc, location of focus site (position 0) in GenBank file. Each subsequent line represents a observation.
Format: TXT Size: 87KB Download file
Additional File 3:
Oryza sativa data file File is plain text, space delimited. First row is column headings with variable names: edit; + site is edited, - site is not edited; -20 through 20, nucleotide position relative to edited site; cp, codon position; fe, estimated folding energy; dfe, difference in estimated folding energy between pre-edited and edited sequences; and loc, location of focus site (position 0) in GenBank file. Each subsequent line represents a observation.
Format: TXT Size: 99KB Download file
Additional File 4:
Combined data file File is plain text, space delimited. First row is column headings with variable names: edit; + site is edited, - site is not edited; -20 through 20, nucleotide position relative to edited site; cp, codon position; fe, estimated folding energy; dfe, difference in estimated folding energy between pre-edited and edited sequences; and loc, location of focus site (position 0) in GenBank file. Each subsequent line represents a observation.
Format: TXT Size: 277KB Download file