Table 4

Top 5 GO terms associated with the motif PS000383 ranked according the conditional probability of correctness of association. The column 2~7 consist of the feature vector for motif-GO association is listed, the conditional probability p(Y = 1|X) is calculated with trained model and the true classes are list in right two columns of the table. The definition of the GO terms is listed at the bottom of the table.

GO Terms

Input Features (X)

p(Y = 1|X)

True Class

NT-M

NT

NM

NG|M

NP|T

M.I

GO:0006470

65

122

191

95

27

0.007268

0.97577

1

GO:0005001

23

24

191

95

5

0.003177

0.87681

1

GO:0004726

10

11

191

95

10

0.001331

0.68682

1

GO:0005634

11

1785

191

95

281

5.08E-06

0.27882

0

GO:0005887

17

1162

191

95

225

0.000193

0.15536

0

GO:0006470: Protein amino acid dephosphorylation; Cellular Processes

GO:0005001: transmembrane receptor protein tyrosine phosphatase activity: Molecular Function

GO:0004726: non-membrane spanning protein tyrosine phosphatase activity: Molecular Function

GO:0005634: Nucleus; Cellular Component

GO:0005887: Integral to plasma memberane; Cellular Component

Lu et al. BMC Bioinformatics 2004 5:122   doi:10.1186/1471-2105-5-122