Table 4 |
||||
|
CPU times. The total CPU time required to create all alignments in each test set, measured in seconds on a 2.5 GHz Pentium 4 desktop computer. |
||||
|
Method |
PREFAB |
BAliBASE |
SABmark |
SMART |
|
|
||||
|
MUSCLE-fast |
540 |
11 |
45 |
30 |
|
FFTNS1 |
720 |
16 |
70 |
46 |
|
MUSCLE-prog |
3,000 |
52 |
429 |
180 |
|
MUSCLE |
11,000 |
81 |
1,500 |
560 |
|
POA-blast |
11,000 |
90 |
290 |
670 |
|
CLUSTALW |
15,000 |
160 |
210 |
480 |
|
POA |
24,000 |
130 |
380 |
880 |
|
|
||||
|
Edgar BMC Bioinformatics 2004 5:113 doi:10.1186/1471-2105-5-113 |
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