Table 4

CPU times. The total CPU time required to create all alignments in each test set, measured in seconds on a 2.5 GHz Pentium 4 desktop computer.

Method

PREFAB

BAliBASE

SABmark

SMART


MUSCLE-fast

540

11

45

30

FFTNS1

720

16

70

46

MUSCLE-prog

3,000

52

429

180

MUSCLE

11,000

81

1,500

560

POA-blast

11,000

90

290

670

CLUSTALW

15,000

160

210

480

POA

24,000

130

380

880


Edgar BMC Bioinformatics 2004 5:113   doi:10.1186/1471-2105-5-113

Open Data