Table 3 |
|||||
|
Summary of the overlap study of the two astrocytoma progression marker data sets. A. Internal consistency of the methods under comparison. k = Khatua et al. data set51; vdb = van den Boom et al. data set52 B. Number of significant genes that overlap between the two data sets in the significant gene list for each method. C. Comparison (% overlap) of methods in the k data set. D. Comparison (% overlap) of methods in the vdb data set |
|||||
|
A |
% overlap |
k |
|||
|
|
|||||
|
test |
t-test (p) |
t-test (np) |
PPST |
ABA |
|
|
vdb |
t-test |
5.307 |
|||
|
t-test (np) |
11.248 |
||||
|
PPST |
15.24 |
||||
|
ABA |
3.211 |
||||
|
B |
overlap |
k |
|||
|
vdb |
test |
t-test (p) |
t-test (np) |
PPST |
ABA |
|
t-test |
35 |
||||
|
t-test (np) |
118 |
||||
|
PPST |
187 |
||||
|
ABA |
11 |
||||
|
C |
Test 1 |
||||
|
k |
t-test (p) |
t-test (np) |
PPST |
ABA |
|
|
Test 2 |
t-test (p) |
1 |
78.527 |
74.394 |
2.579 |
|
t-test (np) |
1 |
83 |
4.678 |
||
|
PPST |
1 |
1.28 |
|||
|
ABA |
1 |
||||
|
Test 1 |
|||||
|
D |
v |
t-test (p) |
t-test (np) |
PPST |
ABA |
|
Test 2 |
t-test (p) |
1 |
46.382 |
26.649 |
0 |
|
t-test (np) |
1 |
56.975 |
5.656 |
||
|
PPST |
1 |
7.268 |
|||
|
ABA |
1 |
||||
|
|
|||||
|
Lyons-Weiler et al. BMC Bioinformatics 2004 5:110 doi:10.1186/1471-2105-5-110 |
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