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Exemplar Genes Found to the Significant (p < 0.05) under the PPST test in the lymphoma data set[18], but missed under the t-test. |
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| Gene |
PPST Score* |
Pattern |
p-value under t-test |
|
|
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| B-cell growth factor (IL-4) |
13 |
ABA |
0.301 |
| CCND1 Cyclin D1 (PRAD1; parathyroid adenomatosis 1) |
13 |
AB |
0.087 |
| homeobox protein Cdx2 mRNA |
12 |
AB |
0.232 |
| LIF Leukemia inhibitory factor (cholinergic differentiation factor) |
10 |
AB |
0.181 |
| tumor susceptiblity protein (TSG101) mRNA |
-16 |
BA |
0.526 |
| carcinoembryonic antigen |
-18 |
BA |
0.328 |
| CCND2 Cyclin D2 |
-18 |
BA |
0.076 |
| VIM Vimentin |
-18 |
BA |
0.976 |
|
*PPST Score = s1 or -s2 (for AB or BA pattern) and s3 (for ABA pattern) | |||
Lyons-Weiler et al. BMC Bioinformatics 2004 5:110 doi:10.1186/1471-2105-5-110 |
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