Table 1

Number of Genes with Significant Differences between Tumor and Normal Class in Various Cancer Types under the PPST and ABA tests and the parametric t-test (for comparison)


α = 0.1
α = 0.05

Data Set
PPST
ABA test (ABA/BAB)
PPST
ABA test (ABA/BAB)
parametric tα = 0.05 **

breast7
572
40/5
326
28/49
313
melanoma15
662
60/202
312
38/133
347
colon45
1788
55/153
1558
46/55
1378
ovarian16
3344
253/63
2060
189/22
1813
lymphoma18
2077
286/42
1114
194/30
1370
lung19
614
40/3
506
35/3
389

*A = tumor sample group, B = normal sample group **pooled variance t

Lyons-Weiler et al. BMC Bioinformatics 2004 5:110   doi:10.1186/1471-2105-5-110