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List of Normalization Methods |
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| List of normalization methods including print-tip scale normalization |
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| Method |
Notation |
Description |
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| O |
Original data |
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| Global |
G |
Global median normalization |
| GP |
Global median normalization on each print-tip |
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| GPS |
Global median normalization on each print-tip with scale normalization |
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| G.s |
Global median normalization and between-slide scale normalization |
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| GP.s |
Global median normalization on each print-tip and between-slide scale normalization |
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| GPS.s |
Global median normalization on print-tip with scale normalization and between-slide scale normalization |
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| Linear |
L |
Intensity dependent linear regression normalization |
| LP |
Intensity dependent linear regression normalization on each print-tip |
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| LPS |
Intensity dependent linear regression normalization on each print-tip with scale normalization |
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| L.s |
Intensity dependent linear regression normalization and between-slide scale normalization |
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| LP.s |
Intensity dependent linear regression normalization on each print-tip and between-slide scale normalization |
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| LPS.s |
Intensity dependent linear regression normalization on each print-tip with scale normalization and between-slide scale normalization |
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| Nonlinear |
N |
Intensity dependent nonlinear regression normalization (LOWESS) |
| NP |
Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip |
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| NPS |
Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization |
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| N.s |
Intensity dependent nonlinear regression normalization (LOWESS) and between-slide scale normalization |
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| NP.s |
Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip and between-slide scale normalization |
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| NPS.s |
Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization and between-slide scale normalization |
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Park et al. BMC Bioinformatics 2003 4:33 doi:10.1186/1471-2105-4-33 |
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