Figure 1.

Effect of Overlap Score Threshold on Number of Predicted and Matched Known Complexes for the Gavin Evaluation Figure legend: Average and maximum number of predicted and matched known complexes seen during MCODE parameter optimization (840 parameter combinations) plotted as a function of overlap score threshold. As the stringency for the closeness that a predicted complex must match a known complex is increased (increase in overlap score), fewer predicted complexes match known complexes. Note that these curves do not correspond to the best parameter set, but rather are an average of results from all tried parameter combinations.