Table 1

Summary of contents of SeqHound database tables.

Database Table

Contents Summary


ASNDBs

GI and ASN.1 Bioseq – partitioned into divisions

PARTITION

GI and division – master list

ACCDB

GI, accession number, and database specific identifier (if available)

NUCPROT

protein GI and DNA GI

PUBSEQ

GI and MEDLINE identifier

REDUND

GI and redundant group identifier

SENGI

GI and SeqEntry identifier – partitioned into divisions

SENDBs

SeqEntry identifier, ASN.1 SeqEntry and division

CHROM

GI and chromosomal identifier from complete genome

TAXGI

GI and taxonomy identifier

TAXDB

Taxonomy hierarchy

GCODEDB

Taxonomy identifier and genetic code

DIVDB

Entrez division

MMGI

GI and MMDB identifier

MMDB

MMDB identifier and ASN.1 for 3-D structures (Biostruc)

DOMDB

GI, ASN.1 structural domain and chain redundant set tag

NRBLASTDB

GI and ASN.1 list of neighbours

BLASTDB

Hashed pair of GIs and ASN.1 alignment from BLAST comparison

GO_PARENT

Gene ontology

GO_NAME

GO identifier and function name

GO_SYNONYM

GO identifier and synonym

GO_REFERENCE

GO identifier and reference to other databases (e.g. Enzyme Consortium)

LL_GO

GI and GO identifier

LL_OMIM

GI and Online Mendelian Inheritance in Man identifier

LL_LLINK

GIs, Locus Link identifier and chromosomal location

LL_CDD

GI and Conserved Domain Database identifier extracted from Locus Link database

RPSDB

GI and Conserved Domain Database identifier, details of alignment

DOMNAME

Conserved Domain Database annotation


Michalickova et al. BMC Bioinformatics 2002 3:32   doi:10.1186/1471-2105-3-32

Open Data