Table 4

Modules predicted by Ahab from the hairy derived Gibbs motifs that are patterned in the early blastoderm.

Rank

Score

Gene

Location

1 *

42.16

hairy (stripe 7 element)

up/10.9 kb

2 *

36.43

hairy (stripe 6 element)

up/9.2 kb

3 *

31.43

hairy (stripe 5 element)

up/6.2 kb

4 *

25.08

hairy (stripe 7 element)

up/10.4 kb

5

22.58

hunchback (hb central stripe)

up/3.3 kb

7

21.91

abd-A (in iab-7 region)

up/83.2 kb

8

20.02

homothorax

intra

9

19.41

bxd (in bxd reg region)

up/18.8 kb

10

18.55

frizzled 2

up/37.9 kb

16

17.76

hairy (not in known modules)

up/18.9 kb

17

17.73

abd-A

up/0.2 kb

21

17.43

abd-A

up/35.8 kb

24

16.69

fd64A

up/1.4 kb

25

16.55

nubbin

up/2.6 kb

31

16.10

extra macrochaetae

down/2.2 kb

37

15.90

knirps

intra

46

15.90

Btk29A

intra

11

18.55

CG6559

up/30 kb

39

15.72

CG6559

up/45 kb

The last two modules are distinguished by proximity to a common gene. Modules which were used to construct weight matrices are marked with stars. The format follows Table 1. For references and additional material see additional File 5.

Rajewsky et al. BMC Bioinformatics 2002 3:30   doi:10.1186/1471-2105-3-30