Additional file 16.
Table S2. E1, E2 and E3 in Set-up 1 with annotation driven alignment (IA) for 20M 100 bp-PE. Analogous to Additional file 15: Table S1, but with IA provided during the alignment.
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Angelini et al. BMC Bioinformatics 2014 15:135 doi:10.1186/1471-2105-15-135