Additional file 1.

Figure S1. F-measure in Set-up 1 for 100 bp-PE. Panels A (upper left) and B (upper right) depict F-measure versus the sequencing depth for each compared method when the alignment is annotation driven using CA and IA, respectively. Panels C (bottom left) and D (bottom right) are analogous to Panels A and B, when the alignment is data driven. The figure refers to Set-up 1 and 100 bp-PE. Within each panel, methods in Mode 1 are depicted with continuous line, methods in Mode 2 with dashed line, methods in Mode 3 with dotted line. When the alignment is annotation driven, the same annotation provided during the alignment was used for Mode 1 and 2.

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Angelini et al. BMC Bioinformatics 2014 15:135   doi:10.1186/1471-2105-15-135