Figure 2.

Precision and Recall bar-plot in Set-up 1 for 100 bp-PE. Panels A (upper left) and B (upper right) depict precision and recall bar-plots for the compared methods when the alignment is annotation driven. Panels C (bottom left) and D (bottom right) are analogous to Panels A and B, when the alignment is data driven. The figure refers to Set-up 1 and 100 bp-PE. Within each panel, the left column refers to methods used in Mode 1, middle column to methods used in Mode 2, right column to methods used in Mode 3; upper row represents results when the annotation is CA, bottom row is the analogous case when the annotation is IA. Different bars of the same colour for the same method and mode of action correspond to the different depth (i.e., from left to right 0.25M, 0.5M, 1M, 5M, 10M and 20M). When the alignment is annotation driven, the same annotation provided during the alignment was used for Mode 1 and 2.

Angelini et al. BMC Bioinformatics 2014 15:135   doi:10.1186/1471-2105-15-135
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