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Automated ensemble assembly and validation of microbial genomes

Sergey Koren1*, Todd J Treangen1, Christopher M Hill2, Mihai Pop2 and Adam M Phillippy1

Author Affiliations

1 National Biodefense Analysis and Countermeasures Center, 110 Thomas Johnson Drive, Frederick, MD 21702, USA

2 Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA

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BMC Bioinformatics 2014, 15:126  doi:10.1186/1471-2105-15-126

Published: 3 May 2014

Additional files

Additional file 1:

Assembly statistics and reference-free validation scores for all assemblers used on the M. tuberculosis dataset.

Format: XLSX Size: 124KB Download file

Open Data

Additional file 2:

Computational time for the longest-running steps within iMetAMOS as well as total times per sample for the M. tuberculosis dataset.

Format: XLSX Size: 47KB Download file

Open Data