Table 7

Assembly reconciliation tools performances on Rhodobacter sphaeroides.

Tool

User (CPU) time

Wall clock time


Allpaths-LG + MSR-CA

GAM-NGS

1h 21' 09" + 2' 20"

5' 03" + 43"

GAA

17"

17"

ZORRO

14' 46"

14' 46"


MSR-CA + Allpaths-LG

GAM-NGS

1h 21' 09" + 2' 19"

5' 03" + 48"

GAA

19"

19"

ZORRO

16' 15"

16' 15"


Bambus2 + SOAPdenovo

GAM-NGS

1h 26' 47" + 2' 35"

5' 53" + 1' 13"

GAA

3' 59"

3' 59"

ZORRO

8' 22"

8' 22'


SOAPdenovo + Bambus2

GAM-NGS

1h 26' 47" + 2' 23"

5' 53" + 1' 09"

GAA

3' 47"

3' 47"

ZORRO

7' 44"

7' 44"


In GAM-NGS's entries the first value indicates the time spent in alignment phase, while the second one is GAM-NGS's run time.

Vicedomini et al. BMC Bioinformatics 2013 14(Suppl 7):S6   doi:10.1186/1471-2105-14-S7-S6

Open Data