Table 4

Assembly reconciliation tools performances on Staphylococcus aureus.

Tool

User (CPU) time

Wall clock time


Allpaths-LG + MSR-CA

GAM-NGS

1h 10' 19" + 51"

4' 10" + 17"

GAA

1' 20"

1' 20"

ZORRO

3' 04"

3' 04"


MSR-CA + Allpaths-LG

GAM-NGS

1h 10' 19" + 49"

4' 10" + 17"

GAA

1' 11"

1' 11"

ZORRO

14' 18"

14' 18"


Allpaths-LG + SOAPdenovo

GAM-NGS

1h 10' 53" + 33"

5' 12" + 24"

GAA

5' 04"

5' 04"

ZORRO

7' 08"

7' 08"


SOAPdenovo + Allpaths-LG

GAM-NGS

1h 10' 53" + 34"

5' 12" + 25"

GAA

4' 49"

4' 49"

ZORRO

9' 52"

9' 52"


In GAM-NGS's entries the first value indicates the time spent in alignment phase, while the second one is GAM-NGS's run time.

Vicedomini et al. BMC Bioinformatics 2013 14(Suppl 7):S6   doi:10.1186/1471-2105-14-S7-S6

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