Table 1

Overview of the databases used in ModiDB 1.2.1. The databases used and relevant references are listed with the description of extracted information and the version or download date included in MobiDB.

Database

Reference

Information extracted

Version/Date


UniProt

[30]

Reference sequences

2012-07


DisProt

[15]

Disorder and structure

6.00


IDEAL

[16]

Disorder and structure

2012-05-09


PDB

[17]

Disorder and structure

2012-08-15


SIFTS

[29]

UniProt-PDB links

2012-08-15


Pfam

[34]

Functional domain annotations

Web service


OMA Browser

[31]

Protein orthologs

2012-03


CATH

[35]

Structural classification

3.4


DSSP

[36]

Secondary structure

2012-08-15


Di Domenico et al. BMC Bioinformatics 2013 14(Suppl 7):S3   doi:10.1186/1471-2105-14-S7-S3

Open Data