Table 5

Known and determined S-S bonds for all molecules by combining MS2DB+, SVM, and CSP using the Shafer rule.

Protein

Known Bonds

Bonds Found

Belief


ST8Sia IV

142-292, 156-356

142-292, 156-356

0.66, 0.68

Beta-LG

82-176, 122-135

82-176, 122-135

0.49, 0.36

FucT VII

68-76, 211-214,

318-321

68-76, 211-214,

318-321

0.43, 0.26, 0.54

Β1,4-GalT

134-176, 247-266

134-176, 247-266

0.35, 0.36

C2GnT-I

59-413, 100-172, 151-199, 372-381

59-413, 100-172, 151-199, 372-381

0.07, 0.08, 0.26,0.06

Lysozyme

24-145, 48-133

24-145, 48-133, 82-98, 94-112

0.31, 0.13, 0.10, 0.10

FT III

81-338, 91-341

81-338

0.67


The true bonds are shown in bold.

Singh and Murad BMC Bioinformatics 2013 14(Suppl 2):S20   doi:10.1186/1471-2105-14-S2-S20

Open Data