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This article is part of the supplement: Selected articles from the Eleventh Asia Pacific Bioinformatics Conference (APBC 2013): Bioinformatics

Open Access Proceedings

Identifying cross-category relations in gene ontology and constructing genome-specific term association networks

Jiajie Peng12, Jin Chen23* and Yadong Wang1*

Author Affiliations

1 School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China

2 MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI 48824, USA

3 Department of Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA

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BMC Bioinformatics 2013, 14(Suppl 2):S15  doi:10.1186/1471-2105-14-S2-S15

Published: 21 January 2013

Additional files

Additional file 1:

Gold-standard set on Yeast. 175 gold-standard set of MF-BP relationships in yeast.

Format: XLSX Size: 12KB Download file

Open Data

Additional file 2:

MF-BP Association Network of yeast. MF-BP Association Network of yeast. The nodes represent terms and the edges represent the term associations discovered by CroGO. The yeast MF-BP association network consists many small disconnected graphs.

Format: PDF Size: 1.5MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 3:

MF-BP Association Network of human. MF-BP Association Network of human. The nodes represent terms and the edges represent the associations discovered by CroGO. The human MF-BP association network has a large subgraph occupying 50% of total edges.

Format: PDF Size: 1.6MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Gold-standard set on Human. 80 gold-standard set of MF-BP relationships in human.

Format: XLSX Size: 10KB Download file

Open Data

Additional file 5:

genes and concepts that connect "DNA binding", "meiotic mismatch repair" and "chiasma assembly". The genes and concepts that connect "DNA binding", "meiotic mismatch repair" and "chiasma assembly". The figure was generated with BioGraph [40].

Format: PDF Size: 5.1MB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data