Extending amino acids selection. Left: We expand firstly the selection by 170 - 176&193, where we can see that the cavity appeared in the beginning and in the end of the simulation predominantly. Right: We expand selection furthermore by (170 - 176)&(193 - 199), where we notice that even more cavities appeared although still not as many in the middle of the simulation. We show a typical cavity for both of selections.
Parulek et al. BMC Bioinformatics 2013 14(Suppl 19):S4 doi:10.1186/1471-2105-14-S19-S4