Table 2

System output.

System Output

Detect Defective Cliques + MCL Clustering


Cluster

Proteins


1

app1, swe1, hsl7

2

act1, srv2, bnr1, bni1, cof1, trm5, aip1

3

sla2, abp1, yor284w, rvs167, ysc84, sla1, ynl086w, ypl246c, rvs161, acf2, ybr108w, yjr083c, ygr268c, ypr171w, yhr133c

4

cap2, gic2

5

crn1, svl3


The implemented workflow is composed by two algorithms in cascade: Detective Cliques (network preprocessing) and MCL (network clustering). The system running with standard parameters gives five protein complexes as result.

Fiannaca et al. BMC Bioinformatics 2013 14(Suppl 1):S5   doi:10.1186/1471-2105-14-S1-S5

Open Data