The XperimentR / OMERO integration user interface. Screenshot showing XperimentR integration with OMERO. The user can attach an image stored in OMERO to an XperimentR assay graph node (for microscopy). The user selects the required image via the popup window which queries the OMERO data store using the user credentials of the current XperimentR user. The images that the user has access to are displayed in a directory tree with levels representing Projects, Data Sets and Images. As the user moves the mouse pointer over the Image nodes of the tree thumbnail versions of the image are rendered in OMERO as shown. The user can link the image to XperimentR by clicking on it. The image and metadata is then available for download through XperimentR.
Tomlinson et al. BMC Bioinformatics 2013 14:8 doi:10.1186/1471-2105-14-8