Table 7

Runtime performance under different error rate conditions
76 bp 100 bp
Error 2% 4% 6% 2% 4% 6%
Hybrid aligner 30s 30s 29 s 37 s 38 s 37 s
GASSST 227 s 216 s 199 s 292 s 268 s 253 s
BWA 109 s 150 s 162 s 153 s 214 s 221 s
Speedup1 7.6 7.2 6.8 7.9 7.1 6.8
Speedup2 3.6 5.0 5.6 4.1 5.7 5.9

Chen et al.

Chen et al. BMC Bioinformatics 2013 14:67   doi:10.1186/1471-2105-14-67

Open Data