Table 1

Runtime performance for short read mapping with a single thread on an AMD 2.1 GHz CPU
Runtime (s) Percentage of time spent
Indexing 7.03 0.79%
Seed generation 120.14 13.5%
Extension 760.19 85.7%

Chen et al.

Chen et al. BMC Bioinformatics 2013 14:67   doi:10.1186/1471-2105-14-67

Open Data