Table 3

Comparison of coverage estimates obtained using different methods
Mean SD Ratio Correlation
Paired-end 6.168 3.282 100.0% 1.000
Read count (50 bp) 1.824 1.357 29.6% 0.608
Read count extended (150 bp) 5.385 3.036 87.3% 0.934
Individual kernel function 6.207 3.287 100.6% 0.999
Mean paired-end function 6.202 3.331 100.6% 0.986
Mean kernel function 6.251 3.356 101.4% 0.986

Note: Ratio is mean divided by mean of paired-end data and Correlation is the correlation between coverage calculations with the method listed in the row versus those obtained from the paired-end data.

van den Oord et al.

van den Oord et al. BMC Bioinformatics 2013 14:50   doi:10.1186/1471-2105-14-50

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