Open Access Highly Accessed Methodology article

Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki)

David Sturgill12*, John H Malone3, Xia Sun4, Harold E Smith1, Leonard Rabinow4, Marie-Laure Samson4 and Brian Oliver12

Author Affiliations

1 National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, 50 South Drive, Bethesda, MD 20892, USA

2 Program in Computational Biology, Bioinformatics, and Genomics, University of Maryland, College Park, MD 20742, USA

3 Department of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut 06269, USA

4 CNRS UMR 8195, Centre de Neurosciences Paris-Sud, Univ Paris-Sud, Orsay F-91405, CEDEX, France

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BMC Bioinformatics 2013, 14:320  doi:10.1186/1471-2105-14-320

Published: 9 November 2013

Additional files

Additional file 1:

RNA-Seq read depth.

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Additional file 2:

Details of junction detection in Drosophila heads.

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Additional file 3:

Sex-differential results in wild-type heads.

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