Figure 3.

Model Estimates of All Metabolite and Protein Concentration Measurements. Comparison between experimental measurements and model estimates of (A-C) metabolite and (D) protein concentrations for all 20 conditions in the training set. Abbreviations are as follows. glc: glucose, g6p: glucose-6-phosphate, f6p: fructose-6-phosphate, fdp: fructose-1,6-bisphosphate, dhap: dihydroxyacetone phosphate, 13dpg: 1,3-diphosphoglycerate, pep: phosphoenolpyruvate, pyr: pyruvate, 6gpc: 6-phosphogluconate, s7p: sedulose-7-phosphate, ru5pD: rubulose-5-phosphate, nad: nicotinamide adenine dinuceotide (oxidized), nadh: nicotinamide adenine dinuceotide (reduced), nadp: nicotinamide adenine dinuceotide phosphate (oxidized), nadh: nicotinamide adenine dinuceotide phosphate (reduced), GapA: Glyceraldehyde phosphate dehydrogenase, PykF: Pyruvate kinase, Gnd: 6-phosphogluconate dehydrogenase, RpiA: Ribulose 5-phosphate isomerase A, TktB: Transketolase II, Ppc: Phosphoenolpyruvate carboxylase, PtsH: Phosphotransferase system, H subunit, PfkB: Phosphofructokinase II, Tpi: Triosephosphate isomerase, Pgk: Phosphoglycerate kinase, Eno: Enolase, Pgl: 6-phosphogluconolactonase, Rpe: Ribulose 5-phosphate epimerase, TktA: Transketolase I, TalB: Transaldolase B, LpdA: Lipoamide dehydrogenase (part of pyruvate dehydrogenase complex).

Cotten and Reed BMC Bioinformatics 2013 14:32   doi:10.1186/1471-2105-14-32
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