Additional file 5.

Software for the subcellular localization assignment and the PROSITE motif analysis (analyzePrositeSL.pl). To run the program, enter the following at the command line:./analyzePrositeSL.pl [PATTERN|MATRIX|1] [0|1] output_file where argument 1 is the motif type (1 = both), argument 2 represents the subcellular localizations analyzed (0 = seven localizations; 1 = twelve localizations), and the argument 3 is the main name for the output files. The output files are: file.mapping (Additional file 1 and Additional file 2), file.tables (Additional file 3 and Additional file 4), file.statistics (summary of several statistics from the results).

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Parras-Moltó et al. BMC Bioinformatics 2013 14:229   doi:10.1186/1471-2105-14-229