Table 5

Expression estimation of fusions from KPL4 cell line
Fusion Names Split reads Spanning Pairs expression
NFIX-BSG 3 13 304.05
ACIN1-C14ORF119 2 13 163.28
BCL9L-CUFF.3497 8 4 530.01
BSG-NFIC 9 5 13.08
NUP214-NOTCH1 3 3 157.70
BRWD1-LOC100132288 5 3 93.92
SEPT10-PP1R12A 5 2 145.35
WNT5A-CUFF.12313 5 2 243.37
LRRIQ1-SEC14L1 1 5 0
SGK269-KIAA1328 3 3 18.38
ASTN2-CUFF.8591 1 4 0
C9ORF129-CUFF.14016 3 2 33.26
UTS2D-PTGR1 3 2 2.58

Gene name with the prefix “CUFF” are novel genes predicted by Cufflinks.

The reported gene fusions are in bold.

Liu et al.

Liu et al. BMC Bioinformatics 2013 14:193   doi:10.1186/1471-2105-14-193

Open Data