Table 1

The distribution of pairs for each corpus according to classification success level using cross-validation setting
AIMed BioInfer HPRD50 IEPA LLL
Total T F T, % F, % Total T F T, % F, % Total T F T, % F, % Total T F T, % F, % Total T F T, % F, %
0 77 73 4 7.3% 0.1% 58 44 14 1.7% 0.2% 4 1 3 0.6% 1.1% 2 1 1 0.3% 0.2% 5 0 5 0.0% 3.0%
1 95 89 6 8.9% 0.1% 158 107 51 4.2% 0.7% 7 4 3 2.5% 1.1% 13 5 8 1.5% 1.7% 7 0 7 0.0% 4.2%
2 105 101 4 10.1% 0.1% 206 130 76 5.1% 1.1% 12 8 4 4.9% 1.5% 11 3 8 0.9% 1.7% 27 0 27 0.0% 16.3%
3 121 104 17 10.4% 0.4% 306 198 108 7.8% 1.5% 18 7 11 4.3% 4.1% 26 13 13 3.9% 2.7% 10 0 10 0.0% 6.0%
4 139 115 24 11.5% 0.5% 349 203 146 8.0% 2.0% 26 10 16 6.1% 5.9% 30 10 20 3.0% 4.1% 16 0 16 0.0% 9.6%
5 140 91 49 9.1% 1.0% 440 225 215 8.9% 3.0% 20 12 8 7.4% 3.0% 43 19 24 5.7% 5.0% 21 2 19 1.2% 11.4%
6 142 70 72 7.0% 1.5% 481 209 272 8.2% 3.8% 33 9 24 5.5% 8.9% 61 22 39 6.6% 8.1% 26 1 25 0.6% 15.1%
7 176 65 111 6.5% 2.3% 619 248 371 9.8% 5.2% 35 15 20 9.2% 7.4% 51 20 31 6.0% 6.4% 29 8 21 4.9% 12.7%
8 248 72 176 7.2% 3.6% 785 256 529 10.1% 7.4% 37 9 28 5.5% 10.4% 79 31 48 9.3% 10.0% 19 6 13 3.7% 7.8%
9 372 69 303 6.9% 6.3% 876 245 631 9.7% 8.8% 46 10 36 6.1% 13.3% 99 32 67 9.6% 13.9% 26 15 11 9.1% 6.6%
10 461 47 414 4.7% 8.6% 1067 204 863 8.1% 12.1% 61 33 28 20.2% 10.4% 101 38 63 11.3% 13.1% 31 19 12 11.6% 7.2%
11 619 29 590 2.9% 12.2% 1061 164 897 6.5% 12.6% 49 19 30 11.7% 11.1% 112 46 66 13.7% 13.7% 32 32 0 19.5% 0.0%
12 1002 43 959 4.3% 19.8% 1390 183 1207 7.2% 16.9% 57 13 44 8.0% 16.3% 106 47 59 14.0% 12.2% 45 45 0 27.4% 0.0%
13 2137 32 2105 3.2% 43.5% 1870 118 1752 4.7% 24.6% 28 13 15 8.0% 5.6% 83 48 35 14.3% 7.3% 36 36 0 22.0% 0.0%

The distribution of pairs (total, positive and negative) in terms of the number of kernels that classify them correctly. Results shown for each corpus separately. Aggregated results are shown in Figure 1. All the 13 kernels are taken into consideration.

Tikk et al.

Tikk et al. BMC Bioinformatics 2013 14:12   doi:10.1186/1471-2105-14-12

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