Table 5

Comparison of two groups of TFs divided according to results on LASAGNA and MEME
Factor Group 11mean Group 22mean p-value3
# TFBSs4 23.33333 30.85417 0.03196
Mean of TFBS length 18.33468 19.04125 0.3007
SD of TFBS length 5 7.95844 7.730625 0.1846

1. LASAGNA performed better than MEME on TFs in this group.

2. MEME performed better than or equal to LASAGNA on TFs in this group.

3. Wilcoxon signed-rank test p-value.

4. Number of binding sites for each TF.

5. Standard deviation of binding site length for each TF.

Lee and Huang

Lee and Huang BMC Bioinformatics 2013 14:108   doi:10.1186/1471-2105-14-108

Open Data