Additional file 4.

Motifs found by LASAGNA-ChIP and MEME. For each ChIP-seq experiment, the sequence logos of motifs found by LASAGNA-ChIP and MEME are shown. The matching motifs in the TRANSFAC Public and UniPROBE databases found by TOMTOM are listed below each sequence logo. The first ChIPed motif TF is highlighted in yellow if it is among the matching motifs. When the found motif does not resemble those of the ChIPed TF, the first cofactor of the ChIPed TF is highlighted in blue if it is among the matching motifs. Other possibly correct matches are highlighted in green.

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Lee and Huang BMC Bioinformatics 2013 14:108   doi:10.1186/1471-2105-14-108