Table 1

RBM Tasks and RuleBender Scores

Index

Task

Score (1 to 5)


T1

Compose a model from scratch.

4.2

T2

Find and correct an error in a model.

4.8

T3

Understand relationships between rules in the model - do they have overlapping reactants, products, etc.?

4.4

T4

Modify an existing model and run simulations to compare results with those of the original.

4.2

T5

Generate a network; examine species and reactions.

4.4

T6

Run a parameter scan. Examine overall results and look at results for individual trajectories.

4.8

T7

Compare results of scanning a parameter in two different models.

4.4

T8

Find a set of parameters that makes the model behave in a specific way.

3.4


Smith et al. BMC Bioinformatics 2012 13(Suppl 8):S3   doi:10.1186/1471-2105-13-S8-S3

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