Table 11

Critical gene regulatory relationships

Gene-id (i)

Gene name

Gene regulation

References


1

lexA

lexA -| lexA (h1,1), uvrA -| lexA (h1,2)

[11,40,43,44]

2

uvrA

lexA→uvrA (g2,1), recA→uvrA (g2,4)

[43,44]

3

uvrD

lexA -| uvrD (h3,1), uvrA -| uvrD (h3,2)

[11,41,43]

4

recA

uvrD→recA (g4,3)

[43]

5

umuD

uvrA→umuD (g5,2), recA -| umuD (h5,4)

[11,43]

6

polB

uvrD→polB (g6,3)

[44]


Summary of critical gene regulatory relationships obtained by the proposed framework with respect to the results in the literature. The parameters gi,j and hi,j are kinetic orders of the S-system.

Hsiao and Lee BMC Bioinformatics 2012 13(Suppl 7):S8   doi:10.1186/1471-2105-13-S7-S8

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