Table 3

Topological parameters of protein-interaction map in M. tuberculosis

Threshold

Node

Edge

Diameter

Characteristic path length

Clustering coefficient

Power law fitting


None

3465

46119

8

3.341

0.093

1.237

0.5 (PCC)

3409

35582

8

3.419

0.074

1.310

0.5 (COG)

3397

43425

8

3.445

0.099

1.220

0.5 (GOCC)

3461

45193

8

3.355

0.091

1.245

0.5 (GOMF)

3400

31045

8

3.632

0.067

1.431

0.5 (GOBP)

3373

26200

9

3.713

0.076

1.440

0.5 + 0.5 + 0.3

3383

26827

9

3.730

0.062

1.522

(GOCC + GOMF + GOBP)

0.5 + 0.7

3324

33134

9

3.616

0.080

1.289

(PCC + COG)

0.5 + 0.9 + 0.8

3304

29891

9

3.691

0.072

1.336

(PCC + COG + GOCC)

0.5 + 0.7 + 0.4

3212

13244

9

4.388

0.044

1.803

(PCC + GOMF + GOBP)

0.5 + 0.7

3281

21240

11

3.920

0.081

1.414

(COG + GOBP)


Liu et al. BMC Bioinformatics 2012 13(Suppl 7):S6   doi:10.1186/1471-2105-13-S7-S6

Open Data