Table 1

Performance of different retrieval methods on the ASTRAL 1

Method

AUC


IR Tableau: Cosine Similarity + ProDis-ContSHC

0.973

IR Tableau: Cosine Similarity + ProDis-ContHC

0.961

IR Tableau: Cosine Similarity + CDM [30,31]

0.954

IR Tableau: Cosine Similarity [26]

0.948

Tableau Search [56]

0.871

QP Tableau [49]

0.925

Yakusa [57]

0.950

SHEBA [58]

0.941

VAST [59,60]

0.890

TOPS [61,62]

0.871


AUC results for QP Tableau [49], SHEBA [58] and VAST [59,60] are taken from [49], which used exactly the same query set and the same dataset as our experiments.

Wang et al. BMC Bioinformatics 2012 13(Suppl 7):S2   doi:10.1186/1471-2105-13-S7-S2

Open Data