Adjustment of breakpoints. Length of a deletion can be adjusted. In the upper case, the left segment is mapped by Smith-Waterman algorithm with a gap and the length of the deletion is 101. In the lower case, the gap is removed and the length of the deletion is adjusted to 100.
Zhang et al. BMC Bioinformatics 2012 13(Suppl 6):S6 doi:10.1186/1471-2105-13-S6-S6