Figure 4.

Phasing accuracy on read data with varying coverage values. The window based SM error metric as a function of the sequence error rate for coverage values of 2 (Figure 4.1),4 (Figure 4.2),6 (Figure 4.3). Read length was set to 400. The test was done with a population of 5 individuals. The windows size which was used by PPHS is 5 SNPs.

Efros and Halperin BMC Bioinformatics 2012 13(Suppl 6):S3   doi:10.1186/1471-2105-13-S6-S3