Phasing accuracy on simulated data. The window based SM error metric as a function of the sequencing error rate (Figure 3.1) and as a function of the coverage (Figure 3.2). The tests were done with haplotype windows of length was 5 over a population of 5 individuals. The coverage was set to 5 on the left, and the sequencing error rate was set to 3% on the right, each point is the average of 10000 windows.
Efros and Halperin BMC Bioinformatics 2012 13(Suppl 6):S3 doi:10.1186/1471-2105-13-S6-S3