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This article is part of the supplement: Proceedings of the Second Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2012)

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Reconstructing cancer genomes from paired-end sequencing data

Layla Oesper1*, Anna Ritz1, Sarah J Aerni2, Ryan Drebin1 and Benjamin J Raphael13*

Author Affiliations

1 Department of Computer Science, Brown University, Providence, RI, USA

2 BioMedical Informatics Program, Stanford University, Stanford, CA, USA

3 Center for Computational Molecular Biology, Brown University, Providence, RI, USA

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BMC Bioinformatics 2012, 13(Suppl 6):S10  doi:10.1186/1471-2105-13-S6-S10

Published: 19 April 2012

Additional files

Additional file 1:

Figures of the interval-adjacency graph derived for all 5 ovarian genomes analyzed when cancer adjacencies are restricted to those with at least 10 discordant pairs supporting each adjacency.

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