Table 2

Correspondence between classes and original datasets

Class

Description

Linked to

IARC datasets


database

Database information

somatic_mutation

Implicit


gene

Gene information

gene_variation

Implicit


gene_variation

Detailed description of the mutation

gene, somatic_mutation

Gene variations


somatic_mutation

Summary mutation data, linked to bibliography, sample, and variation data

database, sample, gene_variation, somatic_ref

Somatic mutations


sample

Tumor topography, morphology, origin, and classification

somatic_mutation, individual

Somatic mutations


individual

Demographic details, life-style data and genetics of the donor

sample

Somatic mutations


somatic_ref

Bibliographic references where mutations are described

somatic_mutation

Somatic references


A summary of published classes and the correspondence with the original datasets.

Zappa et al. BMC Bioinformatics 2012 13(Suppl 4):S7   doi:10.1186/1471-2105-13-S4-S7

Open Data