Figure 1.

OREMPdb queried in Protégé. We selected OWL2 as export format and we adopted Protégé as default "Data Warehouse" for information storage, retrieval and reasoning; there OREMPdb, provides a single access point to the whole Biomodel.net database of curated models (326 computational pathway models, in 2011/04/15 release). Highlighted in the image: "BIOMOD0000000049.xml_re2", which is a reaction (left frame), and its associated triples (right frame), such as "BIOMOD0000000049.xml_re2 hasProduct L_EGFR". Overall the image presents Protégé showing the details of EGF-EGFR binding reaction (re2, in the model) in biomodel no. 49 [31], which has EGF and EGFR as reactants, and L_EGFR as product.

Umeton et al. BMC Bioinformatics 2012 13(Suppl 4):S6   doi:10.1186/1471-2105-13-S4-S6